Lincoln's order, which declared slaves freed in Confederate-controlled states, has been only temporarily displayed as part of the Archives’ annual Juneteenth celebration.
Trump was indicted in Manhattan last week over a hush money scheme but still faces legal peril from multiple fronts.
The search followed the discovery of documents with classified markings by attorneys last month.
Some of Joe Biden's handwritten musings over his decades of public service are now a part of a special counsel’s investigation into the handling of classified documents.
“Let me be clear: Those classified documents should not have been in my personal residence,” Pence said. “Mistakes were made.”
The request comes after discoveries of classified materials in the homes of President Joe Biden and former Vice President Mike Pence.
The files’ full release has been repeatedly postponed, first by Trump and then Biden, which critics say violates a 1992 Act that mandated their full release by 2017.
Investigators are attempting to determine where gifts sent to Donald Trump that were supposed to go to the National Archives ended up.
The so-called JFK Records Act mandated the full release of the files by 2017, but the Mary Ferrell Foundation says thousands of documents remain secret.
The record-keeping agency said some Trump administration items were still missing, even after the FBI search of Mar-a-Lago.